Publications 2009

Publications at LCVU 2009

Best Paper Award LCVU 2009 for the following paper:

J. van Mameren, P. Gross, G. Farge, P. Hooijman, M. Modesti, M. Falkenberg, G.J.L. Wuite, E.J.G. Peterman,
Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 106   Issue: 43   Pages: 18231-18236   Published: 2009

Other publications:

R. Bethlem en C. Heiner,
Een synchrotron als arena voor koude botsingen
Ned. Tijdschr. v. Natuurkunde 75, 40-43 (2009)

S. Yeremenko, O.F.A. Larsen, P. Bodis, W.J. Buma, J.S. Hannam, D.A. Leigh, S. Woutersen
Chapter: Structural dynamics of rotaxanes studied by infrared photon echo spectroscopy
Springer Series in Chemical Physics, p. 430-432

P. Altoè, N. Haraszkiewicz, F.G. Gatti, P.G. Wiering, C. Frochot, A.M. Brouwer, G. Balkowski, D. Shaw, S. Woutersen, W.J. Buma, F. Zerbetto, G. Orlandi, D.A. Leigh, M. Garavelli
Multistate photo-induced relaxation and photoisomerization ability of fumaramide threads: A computational and experimental study
Journal of the American Chemical Society, Vol. 131 (2009), p. 104-117


M. de Groot, R.W. Field, W.J. Buma
Interference in acetylene intersystem crossing acts as the molecular analog of Young's double-slit experiment
Proceedings of the National Academy of Sciences of the United States of America, Vol. 106 (2009), p. 2510-2514

A.A. Prokofiev, A.S. Moskalenko, I.N. Yassievich, W.D.A.M. de Boer, D. Timmerman, H. Zhang, W.J. Buma, T. Gregorkiewicz
Direct bandgap optical transitions in Si nanocrystals
JETP Letters, Vol. 90 (2009), p. 758-762

A.M. Rijs, I. Compagnon, J. Oomens, J.S. Hannam, D.A. Leigh, W.J. Buma
Stiff, and sticky in the right places: Binding interactions in isolated mechanically interlocked molecules probed by mid-infrared spectroscopy
Journal of the American Chemical Society, Vol. 131 (2009), p. 2428-2429


S. Smolarek, A.M. Rijs, J.S. Hannam, D.A. Leigh, M. Drabbels, W.J. Buma
Conformational flexibility of a rotaxane thread probed by electronic spectroscopy in helium nanodroplets
Journal of the American Chemical Society, Vol. 131 (2009), p. 12902-12903

D.Z. Kandula, A. Renault, C. Gohle, A.L. Wolf, S. Witte, W. Hogervorst, W, Ubachs, K.S.E. Eikema
Ultrafast double pulse parametric amplification for precision Ramsey spectroscopy
Ultrafast Phenomena XVI Proceedings, Springer series in Chemical Physics, page 846-848 (2009)

A.L. Wolf, S.A. v.d. Berg, C. Gohle, E.J. Salumbides, W. Ubachs, K.S.E. Eikema
Frequency comb spectroscopy on calcium ions in a linear Paul trap
Ultrafast Phenomena XVI Proceedings, Springer series in Chemical Physics, page 852-854 (2009) 

A.L. Malec, R. Buning, M.T. Murphy, N. Milutinovic, S.L. Ellison,
J.X. Prochaska, L. Kaper, J. Tumlinson, R.F. Carswell, W. Ubachs
Keck telescope constraint on cosmological variation of the proton-to-electron mass ratio
submitted

J. Liu, E.J. Salumbides, U. Hollenstein, J.C.J. Koelemeij, K.S.E. Eikema, W. Ubachs, F. Merkt,
Determination of ionization and dissociation energies of the hydrogen molecule
J. Chem. Phys. 130 (2009) 174306

A.L. Wolf, S.A. van den Berg, W. Ubachs, K.S.E. Eikema,
Direct frequency comb spectroscopy of trapped ions
Phys. Rev. Lett. 102 (2009) 223901

L. van der Sneppen, F. Ariese, C. Gooijer, W. Ubachs,
Liquid-Phase and Evanescent Wave Ring-Down spectroscopy in analytical chemistry
Annual Review of Analytical Chemistry 2 (2009) 13-35

M.O. Vieitez, T. Ivanov, E. Reinhold, C.A. de Lange, W. Ubachs,
Een Zwaar Bohratoom
Ned. Tijdschr. v. Natuurkunde 75 (2009) 36-38.

D. Ityaksov, S. Stolte, H. Linnartz, W. Ubachs,
Rotational analysis of the A2S+ (v=1,2) - X2P (v=0) electronic bands of 15N18O
J. Mol. Spectr. 255 (2009) 139-143

L. van der Sneppen, C. Gooijer, W. Ubachs, F. Ariese,
Evanescent Wave Cavity Ring-Down detection of cytochrome c on surface-modified prisms
Sensors and Actuators B 139 (2009) 505-510

E.J. Salumbides, A. Khramov, W. Ubachs,
High-resolution 2+1 REMPI study of the a'' 1Sg+ state in N2
J. Phys. Chem. 113 (2009) 2383-2386

C.E. Heiner, H.L. Bethlem, G. Meijer,
A synchrotron for neutral molecules
Chem. Phys. Lett. 473 (2009) 1-9

M.J.R. Heck, A. Renault, E.A.J.M. Bente, Y.-S. Oei, M.K. Smit, K.S.E. Eikema, W. Ubachs, A. Anantathanasarn, R. Notzel,
Passively mode-locked 4.6 GHz and 10.5 GHz quantum dot laser diodes around 1.55 micron with large operating regime
IEEE Journal of Select. Top. in Quant. Electr. 15 (2009) 634-643

W.L. Meerts, C.A de Lange, A.C.J. Weber, E.E. Burnell,
Evolutionary Algorithms to Solve Complicated NMR Spectra
J. Chem. Phys. 130, 044504 (2009)

C.A de Lange, E.E. Burnell,
Scope and limitations of accurate structure determination of solutes dissolved in liquid crystals
submitted (2008)

H.L. Bethlem, W. Ubachs,
Testing the time invariance of fundamental constants using microwave spectroscopy on diatomic radicals
Inlculding the Discussion
Faraday Disc. 142, 25-36 (2009)

L. van der Sneppen, C. Gooijer, W. Ubachs, F. Ariese,
Cavity Ring-Down spectroscopy in analytical chemistry
In: Cavity Ring-Down Spectroscopy; Techniques and Applications
Eds. R. Engeln and G. Berden, Blackwell Publishing (Wiley), 2009, p. 89-112

E.E. Burnell, C.A. de Lange, W.L. Meerts
Novel Strategies for solving highly complex NMR spectra of solutes in liquid crystals
Book chapter: World Scientific Reviw Vol 9.

M.J.R. Heck, E. Salumbides, A. Renault, E.A.J.M. Bente, Y.-S. Oei, M.K. Smit, R. Notzel, R. van Veldhoven, K.S.E. Eikema, W. Ubachs
Analysis of hybrid mode-locking of two-secrion quantum dot lasers operating at 1.5 micron
Optic express 17, 18063 (2009)
M. Lomholt, B. van den Broek, S.-M. Kalisch, G.J.L. Wuite, R. Metzler
Facilitated diffusion with DNA coiling
Proc. Natl. Acad. Sci. U. S. A. (in press)

J. van Mameren, M. Modesti R. Kanaar, C. Wyman, E.J.G. Peterman, G.J.L. Wuite
Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
Nature 457, 745 - 748 (2009), doi: 10.1038/nature07581

W.H. Roos, G.J.L. Wuite
Nanoindentation studies reveal material properties of viruses
Advanced Materials 21 (10-11):1187-1192 (2009) doi: 10.1002/adma.200801709

D. Millo, A. Ranieri, P. Gross, H.K. Ly, M. Borsari, P. Hildebrandt, G.J.L. Wuite, C. Gooijer, G. van der Zwan
The electrochemical response of cytochrome c immobilized on smooth and roughened silver and gold surfaces chemically modified with 11-mercaptounodecanoic acid
Journal of Physical Chemistry 113 (7): 2861–2866 (2009)

Y. Chen, D.L. Burnes, M. de Bruin, M. Mujat, and J. F. de Boer.
Three-dimensional pointwise comparison of human retinal optical property at 845 and 1060  nm using optical frequency domain imaging.
J. Biomed. Opt. 14, 024016 (2009)

C.L. Evans, I. Imran, T. Hasan, J.F. de Boer
In vitro ovarian tumor growth and treatment response dynamics visualized with time-lapse OCT imaging
Opt. Express 17, 8892-8906 (2009) http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-17-11-8892

K. Yi, M. Mujat, B. H. Park, W. Sun, J.W. Miller, J. M. Seddon, L.H. Young, J.F. de Boer, T.C. Chen
Spectral domain optical coherence tomography for quantitative evaluation of drusen and associated structural changes in non-neovascular age-related macular degeneration
British Journal of Ophthalmology 93, 176-181 (2009)

K. Yi, M. Mujat, W. Sun, D. Burnes,M.A. Latina, D.T. Lin, D. G. Deschler, P.A.D. Rubin, B.H. Park, J.F. de Boer, and T.C. Chen
Imaging of Optic Nerve Head Drusen: Improvements With Spectral Domain Optical Coherence Tomography
J Glaucoma 18:373–378 (2009)

S. de Man, K. Heeck, R. J. Wijngaarden, and D. Iannuzzi
Contact potentials in Casimir force setups: an experimental analysis
submitted to J. Vac. Sc. Technl. B , .

G. Gruca, S. de Man, M. Slaman, J. H. Rector, and D. Iannuzzi
Ferrule-top micromachined devices: a new approach to fibre-top technology
Proc. SPIE 7503, PDP07.

A. Petrusis, J. H. Rector, K. Smith, S. de Man, and D. Iannuzzi
Align-and-shine photolithography
Proc. SPIE 7503, 75036Q.

S. de Man, K. Heeck, R. J. Wijngaarden, and D. Iannuzzi
Halving the Casimir force with conductive oxides
Phys. Rev. Lett. 103, 040402.

A. Petrusis, J. H. Rector, K. Smith, S. de Man, and D. Iannuzzi
Align-and-shine technique for series production of photolithography patterns on optical fibers
J. Micromech. and Microeng. 19, 047001.

S. de Man, K. Heeck, and D. Iannuzzi
No anomalous scaling in electrostatic calibrations for Casimir force measurements
Phys. Rev. A 79, 024102.

C. J. Alberts, S. de Man, J. W. Berenschot, V. J. Gadgil, M. C. Elwenspoek, and D. Iannuzzi
Fiber-top refractometer
Meas. Sci. Techn. 20, 034005.

M.O. Vieitez, T.I. Ivanov, E.Reinhold, C.A. de Lange, W. Ubachs
Spectroscopic observation and characterization of H^+ H^- heavy
Rydberg states
http://www.nat.vu.nl/en/sec/atom/Publications/pdf/HR-JPCA.pdf
J. Phys. Chem. A 113 (2009) 13237-13245

R. Haselberg, L. van der Sneppen, F. Ariese, W. Ubachs, C. Gooijer,
G.J. de Jong, G.W. Somsen
Effectiveness of charged non-covalent polymer coatings against protein
adsorption to silica surfaces studied by evanescent-wave cavity ring-down spectroscopy and capillary electrophoresis
http://www.nat.vu.nl/en/sec/atom/Publications/pdf/Haselberg.pdf
accepted Anal. Chem.

Peterman, E.J.G., and J.M. Scholey
Microtubule crosslinkers in mitosis.
Invited minireview in Current Biology (in press)

Calmat, S., J. Hendriks, H. van Heerikhuizen, C.F. Schmidt, S.M. van der Vies, and E.J. Peterman, Dissociation kinetics of the GroEL-gp31 chaperonin complex studied with Forster Resonance Energy Transfer
Biochemistry, 2009.

van Mameren, J., P. Gross, G. Farge, P. Hooijman, M. Modesti, M. Falkenberg, G.J. Wuite, and E.J. Peterman
Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging
Proc Natl Acad Sci U S A, 2009. 106(43): p. 18231-6.

Verbrugge, S., Z. Lansky, and E.J. Peterman
Kinesin's step dissected with single-motor FRET
Proc Natl Acad Sci U S A, 2009. 106(42): p. 17741-6

Verbrugge, S., B. Lechner, G. Woehlke, and E.J. Peterman
Alternating-Site Mechanism of Kinesin-1 Characterized by Single-Molecule FRET Using Fluorescent ATP Analogues
Biophys J, 2009. 97(1): p. 173-82.

Verbrugge, S., S.M. van den Wildenberg, and E.J. Peterman
Novel ways to determine kinesin-1's run length and randomness using fluorescence microscopy
Biophys J, 2009. 97(8): p. 2287-94.

Witte, S., M. Baclayon, E.J. Peterman, R.F. Toonen, H.D. Mansvelder, and M.L. Groot Single-shot two-dimensional full-range optical coherence tomography achieved by dispersion control
Opt Express, 2009. 17(14): p. 11335-49.

R Metzler, B van den Broek, G.J.L. Wuite, M.A. Lomholt
Role of DNA conformation in gene regulation
Chapter to be published in Biophysics of DNA-protein interactions:
From single molecules to biological systems, Williams, M & Maher, J
(Eds.), Springer

Metzler R, Koren T, van den Broek B, Wuite GJL, Lomholt MA
And did he search for you, and could not find you?
Journal of Physics A 42(43):434005 (2009)

P.A. Wiggins, R.T. Dame, M.C. Noom, G.J.L. Wuite
Protein mediated bridging motifs: a key mechanism in biopolymer organization
Biophysical Journal 97(7): 1997-2003 (2009)

W.H. Roos and G.J.L. Wuite
Mechanical properties of viruses
Chapter to be published in Emerging Topics in Physical Virology,
Twarock, R & Stockley, P.G. (Eds.), Imperial College Press

C. Battle, B. van den Broek, M.C. Noom, J. van Mameren, G.J.L. Wuite,
F.C. MacKintosh
Unraveling DNA tori under tension
Physical Review E 80(3): 031917 Part 1 (2009)

P. Gross, G. Farge, E.J.G. Peterman, G.J.L. Wuite
Combining optical tweezers, single molecule fluorescence microscopy
and microfluidics for studies of DNA-proteins interactions
Chapter to be published in Methods in Enzymology: Single Molecule
Methods, Walter, N (Ed.), Elsevier

A. Arkhipov, W.H. Roos, G.J.L. Wuite, K. Schulten
Elucidating the mechanism behind irreversible deformation of viral capsids
Biophysical Journal 97(7): 2061-2069 (2009)

W.H. Roos, K. Radtke, E. Kniesmeijer, H. Geertsema, B. Sodeik, G.J.L. Wuite
Scaffold expulsion and genome packaging trigger stabilization of
Herpes Simplex Virus capsids
Proc. Natl. Acad. Sci. U. S. A. 106:9673-9678 (2009)

N. Laurens, S. Bellamy, A. Harms, Y. Kovacheva, S. Halford, G.J.L. Wuite
Dissecting protein-induced DNA looping dynamics in real time
Nucleic Acids Research   (2009) doi: 10.1093/nar/gkp570

J. van Mameren, M. Modesti R. Kanaar, C. Wyman, E.J.G. Peterman, G.J.L. Wuite
Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
Nature 457, 745 - 748 (2009), doi: 10.1038/nature07581

W.H. Roos, G.J.L. Wuite
Nanoindentation studies reveal material properties of viruses
Advanced Materials  21 (10-11):1187-1192 (2009) doi: 10.1002/adma.200801709

D. Millo, A. Ranieri, P. Gross, H.K. Ly, M. Borsari, P. Hildebrandt,
G.J.L. Wuite, C. Gooijer, G. van der Zwan
The electrochemical response of cytochrome c immobilized on smooth and
roughened silver and gold surfaces chemically modified with
11-mercaptounodecanoic acid
Journal of Physical Chemistry 113 (7): 2861–2866 (2009)

T.D. Visser and E. Wolf
Gouy phase anomaly and its generalization to astigmatic wavefields
Jnl. of the Optical Society of America A, submitted (2009).

T.D. Visser, D. Kuebel, M. Lahiri, T. Shirai and E. Wolf
Unpolarized light beams with different coherence properties
Jnl. of Modern Optics, vol. 56, pp. 1369-1374 (2009).
Click here for the PDF file.

R.W. Schoonover and T.D. Visser
Creating polarization singularities with an N-pinhole interferometer
Physical Review A, vol. 79, 043809 (2009).
Click here for the PDF file.

T.D. Visser
Whose Golden Rule is it anyway?
American Journal of Physics, vol. 77, p. 487 (2009).
Click here for the PDF file.

T. van Dijk, H.F. Schouten and T.D. Visser
Coherence singularities in the far field generated by partially coherent sources
Physical Review A, vol. 79, 033805 (2009).
Click here for the PDF file.

T. van Dijk and T.D. Visser
Evolution of singularities in a partially coherent vortex beam
Jnl. of the Optical Society of America A, vol. 26, pp. 741-744 (2009).

Daniel Irimia, Dimitar Dobrikov, Rob Kortekaas, Han Voet, Daan A. van den Ende, Wilhelm A. Groen, and Maurice H. M. Janssen
A short pulse (7 microsec FWHM) and high repetition rate (dc-5kHz) cantilever piezovalve for pulsed atomic and molecular beams
REVIEW OF SCIENTIFIC INSTRUMENTS 80, 113303  2009
 
Daniel Irimia, Ioannis D. Petsalakis, Giannoula Theodorakopoulos and Maurice H. M. Janssen
Coherent Oscillatory Femtosecond Dynamics in Multichannel Photodynamics of NO2 Studied by Spatially Masked Electron Imaging
Publication Date (Web): November 23, 2009 (Article)
DOI: 10.1021/jp909031p

Arnaud Rouzee, Arjan Gijsbertsen, Omair Ghafur, Ofer M. Shir, Thomas Back, Steven Stolte, Marc J.J. Vrakking
Optimization of laser field-free orientation of a state-selected NO molecular sample 

NEW JOURNAL OF PHYSICS 11, 105040,  OCT 30 2009 


Nico M.M. Nibbering
Wim J. van der Hart, April 17, 1935-March 10, 2009 OBITUARY  
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY vol. 20, issue 10, pp. 1944-1945, OCT 2009 

Arno Vredenborg, Wim Roeterdink, Cornelis A. de Lange, Maurice H.M. Janssen
Revealing femtosecond multiphoton induced multichannel molecular ionization and fragmentation dynamics by photoelectron-photoion coincidence imaging  
CHEMICAL PHYSICS LETTERS vol. 478, issue 1-3, pp. 20-27,   AUG 17 2009 

Jens Mohring, Tiago Buckup, Stefan C. Lehmann, Marcus Motzkus
Generation of phase-controlled ultraviolet pulses and characterization by a simple autocorrelator setup  
JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS vol. 26, issue  8, pp. 1538-1544, AUG 2009

Paul Jansen, David W. Chandler, Kevin E. Strecker
A compact molecular beam machine  
REVIEW OF SCIENTIFIC INSTRUMENTS vol. 80, issue 8, 083105, AUG 2009 

Adrian C.J. Weber, Xuan Yang X, Ronald Y. Dong, W. Leo Meerts, E. Elliot Burnell
Solute order parameters in liquid crystals from NMR spectra solved with evolutionary algorithms: Application of double Maier-Saupe Kobayashi-McMillan theory 
CHEMICAL PHYSICS LETTERS vol. 476, issue 1-3, pp. 116-119, JUL 7 2009  

Dmitry Ityaksov, Steven Stolte, Harold Linnartz, Wim Ubachs
Rotational analysis of the A(2)Sigma(+)((nu=1,2))-X-2 Pi((nu=0)) electronic bands of (NO)-N-15-O-18  
JOURNAL OF MOLECULAR SPECTROSCOPY vol. 255, issue 2, pp.139-143, JUN 2009 

Daniel Irimia, Rob Kortekaas, Maurice H.M. Janssen
In situ characterization of a cold and short pulsed molecular beam by femtosecond ion imaging  
PHYSICAL CHEMISTRY CHEMICAL PHYSICS vol. 11, issue 20, pp. 3958-3966 (2009) 

Wim G. Roeterdink, Kevin E. Strecker, Carl C. Hayden, Maurice H.M. Janssen, David W. Chandler
Imaging the rotationally state-selected NO(A,n) product from the predissociation of the A state of the NO-Ar van der Waals cluster  
JOURNAL OF CHEMICAL PHYSICS vol. 130, issue 13, 134305, APR 7 2009

Omair Ghafur, Arnaud Rouzee, Arjan Gijsbertsen, Wing Kiu Siu, Steven Stolte, Marc J.J.  Vrakking
Impulsive orientation and alignment of quantum-state-selected NO molecules  
NATURE PHYSICS vol. 5, issue 4, pp. 289-293, APR 2009 

Lique F (Lique, F.)1,2,3, van der Tak FFS (van der Tak, F. F. S.)4, Klos J (Klos, J.)3, Bulthuis J (Bulthuis, J.)5,6, Alexander MH (Alexander, M. H.)3
The importance of non-LTE models for the interpretation of observations of interstellar NO
ASTRONOMY & ASTROPHYSICS vol. 493, issue 2, pp. 557-563, JAN 2009 

Bakker, A.D., et al.,
Tumor Necrosis Factor alpha and Interleukin-1 beta Modulate Calcium and Nitric Oxide Signaling in Mechanically Stimulated Osteocytes.
Arthritis and Rheumatism, 2009. 60(11): p. 3336-3345.

Battle, C., et al.,
Unraveling DNA tori under tension.
Physical Review E, 2009. 80(3): p. 031917.

Brangwynne, C.P., et al.,
Intracellular transport by active diffusion.
Trends in Cell Biology, 2009. 19(9): p. 423-427.

Broedersz, C.P., C. Storm, and F.C. MacKintosh,
Effective-medium approach for stiff polymer networks with flexible cross-links.
Physical Review E, 2009. 79(6): p. 061914.

Conti, E. and F.C. MacKintosh,
Cross-Linked Networks of Stiff Filaments Exhibit Negative Normal Stress. Physical Review Letters, 2009. 102(8): p. 088102.

Depken, M., E.A. Galburt, and S.W. Grill,
The Origin of Short Transcriptional Pauses.
Biophysical Journal, 2009. 96(6): p. 2189-2193.

Depken, M. and H. Schiessel,
Nucleosome Shape Dictates Chromatin Fiber Structure.
Biophysical Journal, 2009. 96(3): p. 777-784.

Kang, H., et al.,
Nonlinear Elasticity of Stiff Filament Networks: Strain Stiffening, Negative Normal Stress, and Filament Alignment in Fibrin Gels.
Journal of Physical Chemistry B, 2009. 113(12): p. 3799-3805.

Kasza, K.E., et al.,
Nonlinear elasticity of stiff biopolymers connected by flexible linkers.
Physical Review E, 2009. 79(4): p. 041928.

Koenderink, G.H., et al.,
An active biopolymer network controlled by molecular motors.
Proceedings of the National Academy of Sciences of the United States of America, 2009. 106(36): p. 15192-15197.

Levine, A.J. and F.C. MacKintosh,
The Mechanics and Fluctuation Spectrum of Active Gels.
Journal of Physical Chemistry B, 2009. 113(12): p. 3820-3830.

Mizuno, D., et al.,
High-Resolution Probing of Cellular Force Transmission.
Physical Review Letters, 2009. 102(16): p. 168102.

N.A. Verwey, R. Veerhuis, H.A.M. Twaalfhoven, D.Wouters, J.J.M. Hoozemans, Y.J.M. Bollen, J. Killestein, M. Bibl, J. Wiltfang, C.E. Hack, P. Scheltens, M.A. Blankenstein
Quantification of amyloid-beta 40 in cerebrospinal fluid
Journal of Immunological Methods 348: 57-66 (2009)


A.C. Haagsma , R. Abdillahi-Ibrahim, M.J. Wagner, K. Krab, K. Vergauwen, J. Guillemont J, K. Andries K, H. Lill, A. Koul, D. Bald
Selectivity of TMC207 towards mycobacterial ATP synthase compared with that towards the eukaryotic homologue.
Antimicrob Agents Chemother 53: 1290-1292 (2009)


Z. Ristic, M. Vitali, A. Duci, C. Goetze, K. Kemnitz, W. Zuschratter, H. Lill, D. Bald
Two-stimuli manipulation of a biological motor
J Nanobiotechnology 7: 3 (2009)


P.J. Schoonheim, D.D. Costa Pereira, A.H. de Boer
Dual role for 14-3-3 proteins and ABF transcription factors in gibberellic acid and abscisic acid signalling in barley (Hordeum vulgare) aleurone cells
Plant Cell Environ 32: 439-47 (2009)


O.A. Volkov, T.M. Zaida, P. Völler, H. Lill, J.G. Wise, P.D. Vogel
De-novo Modeling and ESR Validation of a Cyanobacterial F1-ATP Synthase Subunit bb' Left-handed Coiled Coil
Biochem Biophys Acta 1787: 183-190 (2009)

T.D. Visser and E. Wolf
Gouy phase anomaly and its generalization to astigmatic wavefields
Jnl. of the Optical Society of America A, submitted (2009).

T.D. Visser, D. Kuebel, M. Lahiri, T. Shirai and E. Wolf
Unpolarized light beams with different coherence properties
Jnl. of Modern Optics, vol. 56, pp. 1369-1374 (2009).

R.W. Schoonover and T.D. Visser
Creating polarization singularities with an N-pinhole interferometer
Physical Review A, vol. 79, 043809 (2009).

T.D. Visser
Whose Golden Rule is it anyway?
American Journal of Physics, vol. 77, p. 487 (2009).

T. van Dijk, H.F. Schouten and T.D. Visser
Coherence singularities in the far field generated by partially coherent sources
Physical Review A, vol. 79, 033805 (2009).

T. van Dijk and T.D. Visser
Evolution of singularities in a partially coherent vortex beam
Jnl. of the Optical Society of America A, vol. 26, pp. 741-744 (2009).

A. Rupenyan, J. Commandeur, M.L. Groot
CO Photodissociation Dynamics in Cytochrome P450BM3 Studied by Subpicosecond Visible and Mid-Infrared Spectroscopy
Biochemistry, 48 (26): 6104-6110 2009

S. Witte, M. Baclayon, E.J.G. Peterman, R. Toonen, H. Mansvelder, M.L. Groot
Single-shot two-dimensional full-range optical coherence tomography achieved by dispersion control
Optics Express, 17 (14): 11335-11349 2009

M.T.A. Alexandre, T. Domratcheva, C. Bonetti, C; L.J.G.W. van Wilderen, R. van Grondelle, M.L. Groot, K.J. Hellingwerf, J.T.M. Kennis
Primary Reactions of the LOV2 Domain of Phototropin Studied with Ultrafast Mid-infrared Spectroscopy and Quantum Chemistry
Biophys. J, 97 (1): 227-237 2009

O.A. Sytina, D.J. Heyes, C.N. Hunter, M.L. Groot
Ultrafast catalytic processes and conformational changes in the light-driven enzyme protochlorophyllide oxidoreductase (POR)
Biochem. Soc. Trans., 37: 387-391 2009

L.J.G.W. van Wilderen, J. M. Key, I. H.M. Van Stokkum, R. van Grondelle, M.L. Groot
Dynamics of Carbon Monoxide Photodissociation in Bradyrhizobium japonicum FixL Probed by Picosecond Midinfrared Spectroscopy
J. Phys. Chem. B, 113 (11): 3292-3297 2009

Andreas D. Stahl, Mariangela Di Donato, Ivo van Stokkum, Rienk van Grondelle and Marie Louise Groot
A femtosecond visible/visible and visible/mid-IR transient absorption study of the Light Harvesting Complex II
Biophysical Journal Dec 16 2009 issue

Alisa Rupenyan, Ivo H. M. van Stokkum, Jos C. Arents, Rienk van Grondelle,
Klaas J. Hellingwerf, and Marie Louise Groot
Reaction Pathways of Photoexcited Retinal in Proteorhodopsin Studied by
Pump-Dump-Probe Spectroscopy
J. Phys. Chem. B 2009, 113, 16251-16256

A. D. Stahl, M. Di Donato, I.H.M. van Stokkum, R. van Grondelle, and M. L. Groot
A Femtosecond Visible/Visible and Visible/Mid-Infrared Transient Absorption Study of the Light Harvesting Complex II
Biophys. J. 97 3215–3223 2009